ENCODE Tutorial May 2013, Biology of Genomes, CSHL

ENCODE Tutorial May 2013, Biology of Genomes, CSHL

On May 8, 2013, an ENCODE tutorial was held at the Biology of Genomes Meeting at Cold Spring Harbor Laboratory (CHSL), hosted jointly by the ENCODE (NIH/NHGRI) project.

The tutorial was prepared for biologists using human and/or mouse genetic data to study disease and basic biology and explain what data are available, what they mean, how they can be displayed and downloaded, and how they can be used in genetic research on human disease.

Agenda and Resources

All files are in format.

Introduction to ENCODE datatypes and their interpretation

Mike Snyder, Stanford University

• Presentation: ENCODE: Understanding the Genome

How to display and download ENCODE data

Mike Pazin, NHGRI

• Presentation: How to display and download ENCODE data
• ENCODE User's Guide
• Downloading and Displaying ENCODE Data
• Using HaploReg and RegulomeDB to Mine ENCODE Data
• Using sessions to save and share ENCODE browser views and settings
• A standard session for viewing ENCODE data
  To use this session file, which is in .txt format, download it to your computer, then upload the file to the UCSC browser as described in the handout on 'Using sessions ...'

Using ENCODE and Roadmap data to illuminate disease-associated variation

John Stamatoyannopoulos, University of Washington

• Presentation: Using ENCODE and Roadmap data to Illuminate disease-associated variation

For questions or more information contact:

Michael Pazin, Ph.D.
E-mail: pazinm@mail.nih.gov

To view the PDF document(s) on this page, you will need Adobe Reader.